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Scientific contributions of ESBS Alumni

Many ESBS alumni are working or worked in research, for academic institutions and private companies. The AAE acknowledges this deep involvement by listing their scientific contributions.

Besides, this enables anyone to take a look at what kind of researches are possible after the ESBS. The authors can be contacted by alumni or students through the Alumni directory, accessible after registering on the AAE website. If you are not part of the network and you search to contact them, please contact us.

ESBS alumni or students submit their contributions to this page by filling up this form with the appropriate citation (all authors, date, title, journal, volume/issue/pages, doi), as long as they are registered on the AAE website.

Scientific papers, chapters in edited volumes as well as PhD and HDR theses are accepted. Among others, we do not list non-peer reviewed papers (as pre-print or papers in archives), master theses, predatory journals and pseudo-scientific content. In case of doubt, we reject the request.

If you are an institution or company and you want to publish a job offer, please contact us.

The names in bold are ESBS alumni or students. The contributions are ordered by publication date.

Citation format of scientific articles (from APA): “Paper – Authors (Date). Title. Journal, Volume(Issue):Page. DOI”. Note that the authors must respect the format “Smith, J. R.” for “John Robinson Smith”.


  • Paper – Coulet, M., Kepp, O., Kroemer, G., Basmaciogullari, S. (2022). Metabolic Profiling of CHO Cells during the Production of Biotherapeutics. MDPI Cells, 1929(Issue 12). 10.3390/cells11121929


  • Paper – Yun, J., PierrelĂ©e, M., Cho, D., Kim, U., Heo, J., Choi, D., Lee, Y., Lee, B., Kim, H., Habermann, B., Chang, Y. & Kim, H. (2021). Transcriptomic analysis of Chlorella sp. HS2 suggests the overflow of acetyl‐CoA and NADPH cofactor induces high lipid accumulation and halotolerance. Food and Energy Security, 10(1):e267. 10.1002/fes3.267
  • Paper – PierrelĂ©e, M., Reynders, A., Lopez, F., Moqrich, A. & Habermann, B. (2021). Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs). Sci Rep, 11:13691. 10.1038/s41598-021-93128-5
  • Paper – Sun, Z., Vaisvila, R., Hussong, L. M., Yan, B., Baum, C., Saleh, L., Samaranayake, M., Guan, S., Dai, N., CorrĂȘa, I. R., Jr, Pradhan, S., Davis, T. B., Evans, T. C., Jr, & Ettwiller, L. M. (2021). Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Genome research, 31(2):291–300. 10.1101/gr.265306.120
  • Paper – Bassignani, A., Plancade, S., Berland, M., Blein-Nicolas, M., Guillot, A., Chevret, D., Moritz, C., Huet, S., Rizkalla, S., ClĂ©ment, K., DorĂ©, J., Langella, O. & Juste, C. (2021). Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets. Journal of Proteome Research, 20(3):1522-1534. 10.1021/acs.jproteome.0c00669
  • Paper – CarrĂ©, A., Richardson, S.J., Larger, E. & Mallone, R. (2021). Presumption of guilt for T cells in type 1 diabetes: lead culprits or partners in crime depending on age of onset?. Diabetologia, 64(1):15-25. 10.1007/s00125-020-05298-y
  • Paper – CarrĂ©, A. & Mallone, R. (2021). Making Insulin and Staying Out of Autoimmune Trouble: The Beta-Cell Conundrum. Frontiers in Immunology, 12(1):639682. 10.3389/fimmu.2021.639682
  • Paper – Viana, I. M. O., Roussel S., DefrĂȘne, J., Lima, E. M., BarabĂ©, F. & Bertrand, N. (2021). Innate and adaptive immune responses toward nanomedicines. Acta Pharm Sin B., 11(4):852-870. 10.1016/j.apsb.2021.02.022
  • Paper – DefrĂȘne, J., Berrazouane, S., Esparza, N., PagĂ©, N., CĂŽtĂ©, M. F., Gobeil, S., Aoudjit, F. & Tessier, P. A. (2021). Deletion of S100a8 and S100a9 Enhances Skin Hyperplasia and Promotes the Th17 Response in Imiquimod-Induced Psoriasis. J Immunol, 206(3):505-514. 10.4049/jimmunol.2000087
  • Paper – Laurent, T., Schaefer F., Gehrig J. (2021). Fiji plugins for qualitative image annotations: routine analysis and application to image-classification. F1000 research, 9(1248):1. 10.12688/f1000research.26872.2
  • PhD Thesis – PierrelĂ©e, M. (2021). Extracting dynamic pathways with time-course gene expression datasets: from differential expression analysis to temporal multilayer networks. Aix-Marseille UniversitĂ©. tel-03279801


  • Paper – Welsch, L., Bailly, J., Darcq, E., & Kieffer, B. L. (2020). The Negative Affect of Protracted Opioid Abstinence: Progress and Perspectives From Rodent Models. Biological psychiatry, 87(1):54–63. 10.1016/j.biopsych.2019.07.027
  • Paper – Schindler, C., Baumann, H., Blum, A., Böse, D., Buchstaller, H. P., Burgdorf, L., Cappel, D., Chekler, E., Czodrowski, P., Dorsch, D., Eguida, M., Follows, B., Fuchß, T., GrĂ€dler, U., Gunera, J., Johnson, T., Jorand Lebrun, C., Karra, S., Klein, M., Knehans, T., Koetzner, L., Krier, M., Leiendecker, M., Leuthner, B., Li, L., Mochalkin, I., Musil, D., Neagu, C., Rippmann, F., Schiemann, K., Schulz, R., Steinbrecher, T., Tanzer, E. M., Unzue Lopez, A., Viacava Follis, A., Wegener, A. & Kuhn, D. (2020). Large-Scale Assessment of Binding Free Energy Calculations in Active Drug Discovery Projects. Journal of chemical information and modeling, 60(11):5457–5474. 10.1021/acs.jcim.0c00900
  • Paper – Eguida, M., & Rognan, D. (2020). A Computer Vision Approach to Align and Compare Protein Cavities: Application to Fragment-Based Drug Design. Journal of medicinal chemistry, 63(13):7127–7142. 10.1021/acs.jmedchem.0c00422
  • Paper – Bouverot, C., Blachier, S., Roquigny, N., & Guerber, F. (2020). Utilisation de la « Reference change value » en biologie mĂ©dicale : Ă  propos de deux exemples : PSA total et hĂ©moglobine [Use of « Reference change value » in medical biology: about two examples: total PSA and hemoglobin]. Annales de biologie clinique, 78(5):565–573. 10.1684/abc.2020.1588
  • Paper – Deryugina, E., CarrĂ©, A., Ardi, V., Muramatsu, T., Schmidt, J., Pham, C. & Quigley, J.P. (2020). Neutrophil Elastase Facilitates Tumor Cell Intravasation and Early Metastatic Events. iScience, 23(12):101799. 10.1016/j.isci.2020.101799
  • Paper – Viana, I. M. O., Grenier, P. , DefrĂȘne, J., BarabĂ©, F. , Lima, E. M.& Bertrand, N. (2020). Role of the complement cascade in the biological fate of liposomes in rodents. Nanoscale, 12(36):18875-18884. 10.1039/d0nr04100a
  • Paper – Laurent, T., Gehrig J. (2020). Multi-template matching: a versatile tool for object-localization in microscopy images. BMC Bioinformatics, 21:44. 10.1186/s12859-020-3363-7


  • Paper – Cesaro, A., DefrĂȘne, J., Lachhab, A., PagĂ©, N., Tardif, M. R., Al-Shami, A., Oravecz, T., Fortin, P. R., Daudelin, J. F., Labrecque, N., Aoudjit, F., Pelletier, M. & Tessier, P. A. (2019). Enhanced myelopoiesis and aggravated arthritis in S100a8-deficient mice. PLoS One, 14(8):e0221528. 10.1371/journal.pone.0221528
  • Paper – Jeong, H., Kim, S., Hong, B. J., Lee, C. J., Kim, Y. E., Bok, S., Oh, J. M., Gwak, S. H., Yoo, M. Y., Lee, M. S., Chung, S. J., DefrĂȘne, J., Tessier, P., Pelletier, M., Jeon, H., Roh, T. Y., Kim, B., Kim, K. H., Ju, J. H., Kim, S., Lee, Y. J., Kim, D. W., Kim, I. H., Kim, H. J., Park, J. W., Lee Y. S., Lee, J. S., Cheon, G. J., Weissman, I. L., Chung, D. H., Jeon, Y. K. & Ahn, G. O. (2019). Tumor-Associated Macrophages Enhance Tumor Hypoxia and Aerobic Glycolysis. Cancer Res, 79(4):795-806. 10.1158/0008-5472.CAN-18-2545


  • Paper – Gonzalez-Duque, S., Azoury, M.E., Colli, M.L., Afonso, G., Turatsinze, J.V., Nigi, L., Lalanne, A.I., Sebastiani, G., CarrĂ©, A., Pinto, S., Culina, S., Corcos, N., Bugliani, M., Marchetti, P., Armanet, M., Diedisheim, M., Kyewski, B., Steinmetz, L.M., Buus, S., You, S., Dubois-Laforgue, D., Larger, E., Beressi, J.P., Bruno, G., Dotta, F., Scharfmann, R., Eizirik, D.L., Verdier, Y., Vinh, J. & Mallone, R. (2018). Conventional and Neo-antigenic Peptides Presented by ÎČ Cells Are Targeted by Circulating NaĂŻve CD8+ T Cells in Type 1 Diabetic and Healthy Donors. Cell metabolism, 28(6):946-960. 10.1016/j.cmet.2018.07.007


  • Paper – Lackner, D. H., CarrĂ©, A., Guzzardo, P. M., Banning, C., Mangena, R., Henley, T., Oberndorfer, S., Gapp, B.V., Nijman, S.M.B, Brummelkamp, T.R. & BĂŒrckstĂŒmmer, T. (2015). A generic strategy for CRISPR-Cas9-mediated gene tagging. Nature Communications, 6(1):10237. 10.1038/ncomms10237
  • Paper – Tsai, S. Y., Segovia, J. A., Chang, T. H., Shil, N. K., Pokharel, S. M., Kannan, T. R., Baseman, J. B., DefrĂȘne, J., PagĂ©, N., Cesaro, A., Tessier, P. A. & Bose, S. (2015). Regulation of TLR3 Activation by S100A9. J Immunol., 195(9):4426-37. 10.4049/jimmunol.1500378